IL_5MC6_117
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_117 not in the Motif Atlas
- Homologous match to IL_8C3A_037
- Geometric discrepancy: 0.1185
- The information below is about IL_8C3A_037
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5MC6|1|BQ|U|954
5MC6|1|BQ|U|955
5MC6|1|BQ|U|956
*
5MC6|1|BQ|A|965
5MC6|1|BQ|U|966
5MC6|1|BQ|A|967
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AR
- 60S ribosomal protein L28
- Chain AV
- 60S ribosomal protein L29
- Chain BB
- 60S ribosomal protein L18-A
- Chain BJ
- 60S ribosomal protein L21-A
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