IL_5MC6_119
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUAU*AAG
- Length
- 8 nucleotides
- Bulged bases
- 5MC6|1|BQ|A|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_119 not in the Motif Atlas
- Homologous match to IL_8P9A_264
- Geometric discrepancy: 0.5507
- The information below is about IL_8P9A_264
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25463.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
5MC6|1|BQ|C|977
5MC6|1|BQ|G|978
5MC6|1|BQ|U|979
5MC6|1|BQ|A|980
5MC6|1|BQ|U|981
*
5MC6|1|BQ|A|1102
5MC6|1|BQ|A|1103
5MC6|1|BQ|G|1104
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AV
- 60S ribosomal protein L29
- Chain BB
- 60S ribosomal protein L18-A
- Chain BO
- 60S ribosomal protein L7-A
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