IL_5MC6_138
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAG*CG
- Length
- 5 nucleotides
- Bulged bases
- 5MC6|1|BQ|A|1386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_138 not in the Motif Atlas
- Homologous match to IL_8C3A_062
- Geometric discrepancy: 0.1566
- The information below is about IL_8C3A_062
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
5MC6|1|BQ|C|1385
5MC6|1|BQ|A|1386
5MC6|1|BQ|G|1387
*
5MC6|1|BQ|C|1420
5MC6|1|BQ|G|1421
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain BE
- 60S ribosomal protein L4-A
- Chain BG
- 60S ribosomal protein L32
- Chain BM
- 60S ribosomal protein L6-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: