IL_5MC6_145

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_145 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.3186

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

5MC6|1|BQ|U|1564
5MC6|1|BQ|G|1565
*
5MC6|1|BQ|C|1574
5MC6|1|BQ|A|1575
5MC6|1|BQ|G|1576

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L25

Chain BS

5.8S ribosomal RNA; 5.8S rRNA