IL_5MC6_147

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

5MC6|1|BQ|U|1820, 5MC6|1|BQ|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_147 not in the Motif Atlas

Homologous match to IL_8C3A_483

Geometric discrepancy: 0.3566

The information below is about IL_8C3A_483

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25360.1

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

5MC6|1|BQ|G|1623
5MC6|1|BQ|G|1624
*
5MC6|1|BQ|U|1819
5MC6|1|BQ|U|1820
5MC6|1|BQ|U|1821
5MC6|1|BQ|C|1822

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L38

Chain BN

60S ribosomal protein L34-A