IL_5MC6_163

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CU*GAG

Length

5 nucleotides

Bulged bases

5MC6|1|BQ|A|2324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_163 not in the Motif Atlas

Homologous match to IL_5TBW_082

Geometric discrepancy: 0.1693

The information below is about IL_5TBW_082

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5MC6|1|BQ|C|2128
5MC6|1|BQ|U|2129
*
5MC6|1|BQ|G|2323
5MC6|1|BQ|A|2324
5MC6|1|BQ|G|2325

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains