IL_5MC6_170

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_170 not in the Motif Atlas

Homologous match to IL_8C3A_094

Geometric discrepancy: 0.1328

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

5MC6|1|BQ|G|2276
5MC6|1|BQ|C|2277
*
5MC6|1|BQ|G|2307
5MC6|1|BQ|C|2308
5MC6|1|BQ|A|2309
5MC6|1|BQ|U|2310

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AS

60S ribosomal protein L41-A

Chain n

Transfer RNA; tRNA