IL_5MC6_176

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

5MC6|1|BQ|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_176 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1087

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

5MC6|1|BQ|U|2423
5MC6|1|BQ|A|2424
5MC6|1|BQ|G|2425
*
5MC6|1|BQ|U|2604
5MC6|1|BQ|G|2605
5MC6|1|BQ|G|2606
5MC6|1|BQ|G|2607

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain AQ

60S ribosomal protein L15-A

Chain AW

60S ribosomal protein L2-A