IL_5MC6_179
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- 5MC6|1|BQ|A|2626
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_179 not in the Motif Atlas
- Homologous match to IL_5TBW_098
- Geometric discrepancy: 0.1477
- The information below is about IL_5TBW_098
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
5MC6|1|BQ|G|2614
5MC6|1|BQ|G|2615
*
5MC6|1|BQ|C|2625
5MC6|1|BQ|A|2626
5MC6|1|BQ|C|2627
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AP
- 60S ribosomal protein L42-A
- Chain AV
- 60S ribosomal protein L29
- Chain BD
- 60S ribosomal protein L10
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BT
- Eukaryotic translation initiation factor 5A-1
Coloring options: