IL_5MC6_184

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_184 not in the Motif Atlas

Geometric match to IL_5TBW_103

Geometric discrepancy: 0.155

The information below is about IL_5TBW_103

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5MC6|1|BQ|G|2824
5MC6|1|BQ|C|2825
5MC6|1|BQ|U|2826
*
5MC6|1|BQ|G|2863
5MC6|1|BQ|A|2864
5MC6|1|BQ|U|2865

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BD

60S ribosomal protein L10

Chain m

Transfer RNA; tRNA