IL_5MC6_185

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGUG*UUUUUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|BQ|U|2826
5MC6|1|BQ|U|2827
5MC6|1|BQ|G|2828
5MC6|1|BQ|U|2829
5MC6|1|BQ|G|2830
*
5MC6|1|BQ|U|2858
5MC6|1|BQ|U|2859
5MC6|1|BQ|U|2860
5MC6|1|BQ|U|2861
5MC6|1|BQ|U|2862
5MC6|1|BQ|G|2863

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein L3

Chain BD

60S ribosomal protein L10

Chain m

Transfer RNA; tRNA