IL_5MC6_186

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_186 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1589

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5MC6|1|BQ|U|2835
5MC6|1|BQ|C|2836
5MC6|1|BQ|A|2837
5MC6|1|BQ|A|2838
5MC6|1|BQ|G|2839
*
5MC6|1|BQ|C|2849
5MC6|1|BQ|G|2850
5MC6|1|BQ|A|2851
5MC6|1|BQ|C|2852
5MC6|1|BQ|A|2853

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain BD

60S ribosomal protein L10

Chain m

Transfer RNA; tRNA