IL_5MC6_193
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 5MC6|1|BQ|A|2971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_193 not in the Motif Atlas
- Geometric match to IL_7RQB_101
- Geometric discrepancy: 0.1802
- The information below is about IL_7RQB_101
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_37497.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 118
Unit IDs
5MC6|1|BQ|C|2960
5MC6|1|BQ|G|2961
*
5MC6|1|BQ|C|2970
5MC6|1|BQ|A|2971
5MC6|1|BQ|G|2972
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AW
- 60S ribosomal protein L2-A
- Chain BD
- 60S ribosomal protein L10
- Chain BT
- Eukaryotic translation initiation factor 5A-1
- Chain m
- Transfer RNA; tRNA
- Chain n
- Transfer RNA; tRNA
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