IL_5MC6_199

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

5MC6|1|BQ|U|3078, 5MC6|1|BQ|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_199 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.1538

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5MC6|1|BQ|C|3063
5MC6|1|BQ|U|3064
*
5MC6|1|BQ|A|3077
5MC6|1|BQ|U|3078
5MC6|1|BQ|U|3079
5MC6|1|BQ|G|3080

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BC

60S ribosomal protein L31-A

Chain BF

60S ribosomal protein L19-A