IL_5MC6_210

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

5MC6|1|BQ|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_210 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.2934

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5MC6|1|BQ|G|3318
5MC6|1|BQ|U|3319
5MC6|1|BQ|A|3320
*
5MC6|1|BQ|U|3387
5MC6|1|BQ|C|3388

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A