IL_5MC6_216

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

5MC6|1|BQ|U|3354, 5MC6|1|BQ|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_216 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.299

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5MC6|1|BQ|C|3349
5MC6|1|BQ|C|3350
*
5MC6|1|BQ|G|3353
5MC6|1|BQ|U|3354
5MC6|1|BQ|U|3355
5MC6|1|BQ|G|3356

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BL

60S ribosomal protein L22-A

Chain V

40S ribosomal protein S8-A