IL_5MC6_230

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAUU*ACUUUUC

Length

12 nucleotides

Bulged bases

5MC6|1|2|U|260, 5MC6|1|2|U|261

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|2|G|204
5MC6|1|2|U|205
5MC6|1|2|A|206
5MC6|1|2|U|207
5MC6|1|2|U|208
*
5MC6|1|2|A|257
5MC6|1|2|C|258
5MC6|1|2|U|259
5MC6|1|2|U|260
5MC6|1|2|U|261
5MC6|1|2|U|262
5MC6|1|2|C|263

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A