IL_5MC6_242
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAAUC*GUUU
- Length
- 9 nucleotides
- Bulged bases
- 5MC6|1|BQ|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MC6_242 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.3058
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5MC6|1|BQ|A|11
5MC6|1|BQ|A|12
5MC6|1|BQ|A|13
5MC6|1|BQ|U|14
5MC6|1|BQ|C|15
*
5MC6|1|BS|G|144
5MC6|1|BS|U|145
5MC6|1|BS|U|146
5MC6|1|BS|U|147
Current chains
- Chain BQ
- 25S ribosomal RNA
- Chain BS
- 5.8S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AH
- 60S ribosomal protein L25
- Chain AQ
- 60S ribosomal protein L15-A
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