IL_5MC6_243

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_243 not in the Motif Atlas

Homologous match to IL_8P9A_233

Geometric discrepancy: 0.1219

The information below is about IL_8P9A_233

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

5MC6|1|BQ|C|27
5MC6|1|BQ|C|28
*
5MC6|1|BQ|G|56
5MC6|1|BQ|A|57
5MC6|1|BQ|G|58

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AQ

60S ribosomal protein L15-A

Chain BP

60S ribosomal protein L35-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA