IL_5MC6_250

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MC6_250 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.1659

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

5MC6|1|BQ|G|1898
5MC6|1|BQ|G|1899
5MC6|1|BQ|A|1900
5MC6|1|BQ|A|1901
5MC6|1|BQ|G|1902
5MC6|1|BQ|U|1903
5MC6|1|BQ|C|1904
5MC6|1|BQ|G|1905
5MC6|1|BQ|G|1906
*
5MC6|1|BQ|C|2333
5MC6|1|BQ|U|2334
5MC6|1|BQ|G|2335
5MC6|1|BQ|U|2336
5MC6|1|BQ|C|2337

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain BA

60S ribosomal protein L3