IL_5MDV_016
3D structure
- PDB id
- 5MDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5MDV|1|1|G|801, 5MDV|1|1|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDV_016 not in the Motif Atlas
- Geometric match to IL_7RQB_018
- Geometric discrepancy: 0.0546
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5MDV|1|1|G|674
5MDV|1|1|A|675
5MDV|1|1|A|676
5MDV|1|1|A|677
5MDV|1|1|C|678
*
5MDV|1|1|G|799
5MDV|1|1|A|800
5MDV|1|1|G|801
5MDV|1|1|A|802
5MDV|1|1|U|803
5MDV|1|1|A|804
5MDV|1|1|G|805
5MDV|1|1|C|806
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
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