IL_5MDV_043
3D structure
- PDB id
- 5MDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- GUUGG*CCAUC
- Length
- 10 nucleotides
- Bulged bases
- 5MDV|1|1|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDV_043 not in the Motif Atlas
- Geometric match to IL_4V9F_043
- Geometric discrepancy: 0.2859
- The information below is about IL_4V9F_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.3
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
5MDV|1|1|G|1059
5MDV|1|1|U|1060
5MDV|1|1|U|1061
5MDV|1|1|G|1062
5MDV|1|1|G|1063
*
5MDV|1|1|C|1075
5MDV|1|1|C|1076
5MDV|1|1|A|1077
5MDV|1|1|U|1078
5MDV|1|1|C|1079
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L10
- Chain I
- 50S ribosomal protein L11
- Chain M
- 50S ribosomal protein L16
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