IL_5MDV_047
3D structure
- PDB id
- 5MDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- CUGCGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 5MDV|1|1|C|1211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDV_047 not in the Motif Atlas
- Homologous match to IL_5J7L_288
- Geometric discrepancy: 0.0645
- The information below is about IL_5J7L_288
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
5MDV|1|1|C|1208
5MDV|1|1|U|1209
5MDV|1|1|G|1210
5MDV|1|1|C|1211
5MDV|1|1|G|1212
5MDV|1|1|A|1213
5MDV|1|1|A|1214
5MDV|1|1|G|1215
*
5MDV|1|1|U|1234
5MDV|1|1|G|1235
5MDV|1|1|G|1236
5MDV|1|1|A|1237
5MDV|1|1|G|1238
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
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