IL_5MDV_056

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GCGAAG*CUAAGC

Length

12 nucleotides

Bulged bases

5MDV|1|1|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDV_056 not in the Motif Atlas

Geometric match to IL_9AXU_113

Geometric discrepancy: 0.24

The information below is about IL_9AXU_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5MDV|1|1|G|1416
5MDV|1|1|C|1417
5MDV|1|1|G|1418
5MDV|1|1|A|1419
5MDV|1|1|A|1420
5MDV|1|1|G|1421
*
5MDV|1|1|C|1577
5MDV|1|1|U|1578
5MDV|1|1|A|1579
5MDV|1|1|A|1580
5MDV|1|1|G|1581
5MDV|1|1|C|1582

Current chains

Chain 1

23S ribosomal RNA

Nearby chains