IL_5MDV_153

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDV_153 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0725

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5MDV|1|2|G|887
5MDV|1|2|G|888
5MDV|1|2|A|889
5MDV|1|2|G|890
5MDV|1|2|U|891
5MDV|1|2|A|892
5MDV|1|2|C|893
5MDV|1|2|G|894
*
5MDV|1|2|U|905
5MDV|1|2|A|906
5MDV|1|2|A|907
5MDV|1|2|A|908
5MDV|1|2|A|909
5MDV|1|2|C|910

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12