IL_5MDW_028
3D structure
- PDB id
- 5MDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDW_028 not in the Motif Atlas
- Homologous match to IL_5J7L_272
- Geometric discrepancy: 0.0743
- The information below is about IL_5J7L_272
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
5MDW|1|1|G|864
5MDW|1|1|C|865
5MDW|1|1|A|866
5MDW|1|1|C|867
5MDW|1|1|U|868
*
5MDW|1|1|A|909
5MDW|1|1|A|910
5MDW|1|1|A|911
5MDW|1|1|C|912
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L16
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