IL_5MDW_041

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

5MDW|1|1|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDW_041 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.2568

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

5MDW|1|1|G|1059
5MDW|1|1|U|1060
5MDW|1|1|U|1061
5MDW|1|1|G|1062
*
5MDW|1|1|C|1076
5MDW|1|1|A|1077
5MDW|1|1|U|1078
5MDW|1|1|C|1079

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L10

Chain I

50S ribosomal protein L11