IL_5MDW_127

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

5MDW|1|2|U|244, 5MDW|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDW_127 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0806

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5MDW|1|2|G|242
5MDW|1|2|A|243
5MDW|1|2|U|244
5MDW|1|2|U|245
5MDW|1|2|A|246
5MDW|1|2|G|247
*
5MDW|1|2|C|277
5MDW|1|2|G|278
5MDW|1|2|A|279
5MDW|1|2|C|280
5MDW|1|2|G|281
5MDW|1|2|A|282
5MDW|1|2|U|283
5MDW|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17