IL_5MDW_192

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDW_192 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0634

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5MDW|1|1|U|1851
5MDW|1|1|U|1852
5MDW|1|1|A|1853
5MDW|1|1|A|1854
5MDW|1|1|U|1855
5MDW|1|1|U|1856
5MDW|1|1|G|1857
5MDW|1|1|A|1858
5MDW|1|1|U|1859
5MDW|1|1|G|1860
*
5MDW|1|1|U|1882
5MDW|1|1|U|1883
5MDW|1|1|G|1884
5MDW|1|1|A|1885
5MDW|1|1|U|1886
5MDW|1|1|C|1887
5MDW|1|1|G|1888
5MDW|1|1|A|1889
5MDW|1|1|A|1890
5MDW|1|1|G|1891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains