IL_5MDY_046

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5MDY|1|1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_046 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0713

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5MDY|1|1|C|1208
5MDY|1|1|U|1209
5MDY|1|1|G|1210
5MDY|1|1|C|1211
5MDY|1|1|G|1212
5MDY|1|1|A|1213
5MDY|1|1|A|1214
5MDY|1|1|G|1215
*
5MDY|1|1|U|1234
5MDY|1|1|G|1235
5MDY|1|1|G|1236
5MDY|1|1|A|1237
5MDY|1|1|G|1238

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20