IL_5MDY_089
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GUGUAGGAUAGG*CCC
- Length
- 15 nucleotides
- Bulged bases
- 5MDY|1|1|U|2111, 5MDY|1|1|U|2118
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MDY_089 not in the Motif Atlas
- Homologous match to IL_3U4M_001
- Geometric discrepancy: 0.5199
- The information below is about IL_3U4M_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
5MDY|1|1|G|2110
5MDY|1|1|U|2111
5MDY|1|1|G|2112
5MDY|1|1|U|2113
5MDY|1|1|A|2114
5MDY|1|1|G|2115
5MDY|1|1|G|2116
5MDY|1|1|A|2117
5MDY|1|1|U|2118
5MDY|1|1|A|2119
5MDY|1|1|G|2120
5MDY|1|1|G|2121
*
5MDY|1|1|C|2177
5MDY|1|1|C|2178
5MDY|1|1|C|2179
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: