IL_5MDY_089

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

5MDY|1|1|U|2111, 5MDY|1|1|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_089 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.5199

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

5MDY|1|1|G|2110
5MDY|1|1|U|2111
5MDY|1|1|G|2112
5MDY|1|1|U|2113
5MDY|1|1|A|2114
5MDY|1|1|G|2115
5MDY|1|1|G|2116
5MDY|1|1|A|2117
5MDY|1|1|U|2118
5MDY|1|1|A|2119
5MDY|1|1|G|2120
5MDY|1|1|G|2121
*
5MDY|1|1|C|2177
5MDY|1|1|C|2178
5MDY|1|1|C|2179

Current chains

Chain 1

23S ribosomal RNA

Nearby chains