IL_5MDY_126

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5MDY|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_126 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1114

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5MDY|1|2|G|147
5MDY|1|2|G|148
5MDY|1|2|A|149
5MDY|1|2|U|150
5MDY|1|2|A|151
5MDY|1|2|A|152
5MDY|1|2|C|153
*
5MDY|1|2|G|168
5MDY|1|2|C|169
5MDY|1|2|U|170
5MDY|1|2|A|171
5MDY|1|2|A|172
5MDY|1|2|U|173
5MDY|1|2|A|174
5MDY|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20