IL_5MDY_134

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_134 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.218

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5MDY|1|2|U|409
5MDY|1|2|G|410
5MDY|1|2|A|411
5MDY|1|2|A|412
5MDY|1|2|G|413
5MDY|1|2|A|414
5MDY|1|2|A|415
5MDY|1|2|G|416
*
5MDY|1|2|U|427
5MDY|1|2|G|428
5MDY|1|2|U|429
5MDY|1|2|A|430
5MDY|1|2|A|431
5MDY|1|2|A|432
5MDY|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4