IL_5MDY_137

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_137 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1312

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5MDY|1|2|G|450
5MDY|1|2|A|451
5MDY|1|2|A|452
5MDY|1|2|G|453
5MDY|1|2|G|454
5MDY|1|2|G|455
*
5MDY|1|2|C|477
5MDY|1|2|A|478
5MDY|1|2|U|479
5MDY|1|2|U|480
5MDY|1|2|G|481
5MDY|1|2|A|482
5MDY|1|2|C|483

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16