IL_5MDY_190

3D structure

PDB id

5MDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDY_190 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.062

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5MDY|1|1|U|1851
5MDY|1|1|U|1852
5MDY|1|1|A|1853
5MDY|1|1|A|1854
5MDY|1|1|U|1855
5MDY|1|1|U|1856
5MDY|1|1|G|1857
5MDY|1|1|A|1858
5MDY|1|1|U|1859
5MDY|1|1|G|1860
*
5MDY|1|1|U|1882
5MDY|1|1|U|1883
5MDY|1|1|G|1884
5MDY|1|1|A|1885
5MDY|1|1|U|1886
5MDY|1|1|C|1887
5MDY|1|1|G|1888
5MDY|1|1|A|1889
5MDY|1|1|A|1890
5MDY|1|1|G|1891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains