IL_5MDZ_135

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDZ_135 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.2155

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5MDZ|1|2|U|409
5MDZ|1|2|G|410
5MDZ|1|2|A|411
5MDZ|1|2|A|412
5MDZ|1|2|G|413
5MDZ|1|2|A|414
5MDZ|1|2|A|415
5MDZ|1|2|G|416
*
5MDZ|1|2|U|427
5MDZ|1|2|G|428
5MDZ|1|2|U|429
5MDZ|1|2|A|430
5MDZ|1|2|A|431
5MDZ|1|2|A|432
5MDZ|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4