IL_5MDZ_138

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDZ_138 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1332

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5MDZ|1|2|G|450
5MDZ|1|2|A|451
5MDZ|1|2|A|452
5MDZ|1|2|G|453
5MDZ|1|2|G|454
5MDZ|1|2|G|455
*
5MDZ|1|2|C|477
5MDZ|1|2|A|478
5MDZ|1|2|U|479
5MDZ|1|2|U|480
5MDZ|1|2|G|481
5MDZ|1|2|A|482
5MDZ|1|2|C|483

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16