IL_5MDZ_148

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

5MDZ|1|2|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDZ_148 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.0651

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5MDZ|1|2|U|662
5MDZ|1|2|A|663
5MDZ|1|2|G|664
5MDZ|1|2|A|665
5MDZ|1|2|G|666
*
5MDZ|1|2|U|740
5MDZ|1|2|G|741
5MDZ|1|2|G|742
5MDZ|1|2|A|743

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S6

Chain t

30S ribosomal protein S15

Chain w

30S ribosomal protein S18