IL_5MDZ_159

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCA*UGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDZ_159 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3385

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

5MDZ|1|2|C|998
5MDZ|1|2|C|999
5MDZ|1|2|A|1000
*
5MDZ|1|2|U|1040
5MDZ|1|2|G|1041
5MDZ|1|2|A|1042
5MDZ|1|2|G|1043

Current chains

Chain 2

16S ribosomal RNA

Nearby chains