IL_5MDZ_192

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDZ_192 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0595

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5MDZ|1|1|U|1851
5MDZ|1|1|U|1852
5MDZ|1|1|A|1853
5MDZ|1|1|A|1854
5MDZ|1|1|U|1855
5MDZ|1|1|U|1856
5MDZ|1|1|G|1857
5MDZ|1|1|A|1858
5MDZ|1|1|U|1859
5MDZ|1|1|G|1860
*
5MDZ|1|1|U|1882
5MDZ|1|1|U|1883
5MDZ|1|1|G|1884
5MDZ|1|1|A|1885
5MDZ|1|1|U|1886
5MDZ|1|1|C|1887
5MDZ|1|1|G|1888
5MDZ|1|1|A|1889
5MDZ|1|1|A|1890
5MDZ|1|1|G|1891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains