IL_5ME0_012

3D structure

PDB id

5ME0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5ME0|1|A|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ME0_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.0439

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5ME0|1|A|G|147
5ME0|1|A|G|148
5ME0|1|A|A|149
5ME0|1|A|U|150
5ME0|1|A|A|151
5ME0|1|A|A|152
5ME0|1|A|C|153
*
5ME0|1|A|G|168
5ME0|1|A|C|169
5ME0|1|A|U|170
5ME0|1|A|A|171
5ME0|1|A|A|172
5ME0|1|A|U|173
5ME0|1|A|A|174
5ME0|1|A|C|175

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20