IL_5ME1_020

3D structure

PDB id

5ME1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ME1_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1196

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5ME1|1|A|U|409
5ME1|1|A|G|410
5ME1|1|A|A|411
5ME1|1|A|A|412
5ME1|1|A|G|413
5ME1|1|A|A|414
5ME1|1|A|A|415
5ME1|1|A|G|416
*
5ME1|1|A|U|427
5ME1|1|A|G|428
5ME1|1|A|U|429
5ME1|1|A|A|430
5ME1|1|A|A|431
5ME1|1|A|A|432
5ME1|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4