IL_5MEI_026

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_026 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.0811

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5MEI|1|1|C|758
5MEI|1|1|U|759
5MEI|1|1|G|760
5MEI|1|1|A|761
5MEI|1|1|U|762
5MEI|1|1|G|763
*
5MEI|1|1|C|768
5MEI|1|1|G|769
5MEI|1|1|G|770
5MEI|1|1|A|771
5MEI|1|1|U|772
5MEI|1|1|G|773

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AP

60S ribosomal protein L42-A

Chain t

60S ribosomal protein L13-A