IL_5MEI_251

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UCGACC*GGAAGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_251 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3609

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5MEI|1|A|U|185
5MEI|1|A|C|186
5MEI|1|A|G|187
5MEI|1|A|A|188
5MEI|1|A|C|189
5MEI|1|A|C|190
*
5MEI|1|A|G|195
5MEI|1|A|G|196
5MEI|1|A|A|197
5MEI|1|A|A|198
5MEI|1|A|G|199
5MEI|1|A|A|200

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8-A