IL_5MEI_261

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

5MEI|1|A|U|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_261 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.1309

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5MEI|1|A|U|439
5MEI|1|A|U|440
5MEI|1|A|A|441
*
5MEI|1|A|U|463
5MEI|1|A|A|464

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain K

40S ribosomal protein S9-A

Chain Z

40S ribosomal protein S24-A