IL_5MEI_267

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUGCCAG*CGGUAAUUCC

Length

18 nucleotides

Bulged bases

5MEI|1|A|A|579

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|A|G|561
5MEI|1|A|G|562
5MEI|1|A|U|563
5MEI|1|A|G|564
5MEI|1|A|C|565
5MEI|1|A|C|566
5MEI|1|A|A|567
5MEI|1|A|G|568
*
5MEI|1|A|C|575
5MEI|1|A|G|576
5MEI|1|A|G|577
5MEI|1|A|U|578
5MEI|1|A|A|579
5MEI|1|A|A|580
5MEI|1|A|U|581
5MEI|1|A|U|582
5MEI|1|A|C|583
5MEI|1|A|C|584

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S3

Chain Y

40S ribosomal protein S23-A

Chain f

40S ribosomal protein S30-A

Chain i

Suppressor protein STM1