IL_5MEI_290

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

5MEI|1|A|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_290 not in the Motif Atlas

Geometric match to IL_4V88_441

Geometric discrepancy: 0.1254

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5MEI|1|A|G|1146
5MEI|1|A|A|1147
*
5MEI|1|A|U|1630
5MEI|1|A|A|1631
5MEI|1|A|C|1632

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain b

40S ribosomal protein S26-B

Chain i

Suppressor protein STM1