IL_5MEI_296

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAUAAGGA*UUUUG

Length

14 nucleotides

Bulged bases

5MEI|1|A|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|A|C|1222
5MEI|1|A|A|1223
5MEI|1|A|A|1224
5MEI|1|A|U|1225
5MEI|1|A|A|1226
5MEI|1|A|A|1227
5MEI|1|A|G|1228
5MEI|1|A|G|1229
5MEI|1|A|A|1230
*
5MEI|1|A|U|1257
5MEI|1|A|U|1258
5MEI|1|A|U|1259
5MEI|1|A|U|1260
5MEI|1|A|G|1261

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S10-A

Chain N

40S ribosomal protein S12

Chain g

Ubiquitin-40S ribosomal protein S31