IL_5MEI_303

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MEI_303 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.2167

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5MEI|1|A|U|1290
5MEI|1|A|G|1291
5MEI|1|A|G|1292
*
5MEI|1|A|C|1323
5MEI|1|A|G|1324
5MEI|1|A|A|1325

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S0-A

Chain D

40S ribosomal protein S2

Chain S

40S ribosomal protein S17-B