IL_5MEI_310
3D structure
- PDB id
- 5MEI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Agelastatin A bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 5MEI|1|A|A|1516, 5MEI|1|A|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5MEI_310 not in the Motif Atlas
- Geometric match to IL_4V88_460
- Geometric discrepancy: 0.195
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5MEI|1|A|G|1488
5MEI|1|A|U|1489
5MEI|1|A|C|1490
5MEI|1|A|U|1491
5MEI|1|A|A|1492
5MEI|1|A|A|1493
5MEI|1|A|C|1494
*
5MEI|1|A|G|1513
5MEI|1|A|U|1514
5MEI|1|A|A|1515
5MEI|1|A|A|1516
5MEI|1|A|U|1517
5MEI|1|A|C|1518
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S3
- Chain U
- 40S ribosomal protein S19-A
- Chain V
- 40S ribosomal protein S20
- Chain e
- 40S ribosomal protein S29-A
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